Mr Gold "procured" Henry for Regina. We know now that he knew who Henry was all along. How did he know when Henry was born and where to find him without magic? Also, how did he get Henry to Storybrooke? Flash back episode soon please!!
We pretty much know now that August wrote Henry's fairytale book, but we still do not know how Mary Margaret came to acquire it. August would have had to grow up a little before he wrote it, so that knocks out my theory of the book just appearing in Mary Margarets Storybrooke apartment after the curse was cast, so how did the book make it's way to Storybrooke? Maybe August gave it to the blue fairy since they seem to have a special relationship who in turn gave it to MM, or perhaps Mr Gold is behind it somehow.
Who is Henry's father??? I suspect he did not die in a fire as Emma told him as she hinted that he was not a very reputable character and wanted to save Henry the pain of learning this. I would love to see a flash back episode of how Emma came to know him.
Who is Dr. Whale in FTL? I really see no hints at the answer to this question, other the monstro(the whale) from pinnochio
Is Regina's mother Cora still alive??
What happened to Graham's wolf companion after his death?
Who is the nurse at the mental hospital who greets Regina when she goes to check in on Belle? Is she a fellow "dark soul" like the Evil Queen?
How is it that Henry grew from a baby to a 10 year old with no one noticing it strange that no one else is aging? Or did that perhaps set the foundation for people to "wake up" and remember? Furthermore, how did Regina not foresee that Henry would quickly realize there is something very very wrong with Storybrooke? Doesn't seem like too smart a move on her part and it's quite atypical of her.
Is Jefferson's house supposed to be the Storybrooke version of wonderland? If so are there other realms hidden around town?(like the nunnery where all the fairies live or the mental hospital where Belle is)
Let me know your theories!!!